Aim​The aim of this workshop is to provide participants with the necessary skills to understand and interpret RNA sequencing datasets. Participants will learn how to process, analyze and visualize datasets in a biological meaningful way. After this workshop, participants should be able to assess the quality of their data, analyze it and understand advantages, limitations and challenges while worki

https://www.stemcellcenter.lu.se/bulk-rna-sequencing-data-analysis - 2025-03-14

Aim​The aim of this workshop is to provide participants with the skills to perform basic analysis of scRNA-Seq data in order to identify cellular sub-populations and their marker genes.Topics includeShort overview of the single cell RNA-Seq dataPreprocessing of 10x data (cellranger pipeline)Filtering and normalization of data (Seurat)Dimensionality reduction and visualization using tSNE (Seurat)Pa

https://www.stemcellcenter.lu.se/single-cell-rna-sequencing-data-analysis - 2025-03-14

We routinely provide assistance with the analysis of various NGS applications (RNAseq, ChIPseq, ATACseq to name a few) as well as single-cell RNAseq. We will also analyse data from microarray platforms such as gene expression arrays. In all cases we recommend that you come as see us so we can check your design, but also so that we are aware data will be forth-coming.With advances in technology, ne

https://www.stemcellcenter.lu.se/core-facilities-0/lund-stem-cell-center-bioinformatics-facility/services - 2025-03-14

Aim​This workshop aims to provide participants with the basic practical skills in using Python programming language. It is geared towards everyone who wants to make their daily data analysis more efficient.Day 1: Basic Python and PandasWhy Python?Introduction to interactive Python programming using Jupyter notebook environmentRecap on variables, flow control and functions- Lists and dictionaries-

https://www.stemcellcenter.lu.se/python-programming-foundations - 2025-03-14

AimThis workshop will be more advanced and will demonstrate how R code can be written and stored for future continuous use. It will also introduce elements of Bioconductor packages. We will also include content requested from participants of R programming foundations I.Topics includeIntroduction to S4 classes Writing methods for S4 classesMaking R packages Sending packages to GithubRequested conte

https://www.stemcellcenter.lu.se/r-programming-foundations-ii - 2025-03-14

Please contact the facility manager for quotes on the services offered: Shamit [dot] Soneji [at] med [dot] lu [dot] se (Shamit[dot]Soneji[at]med[dot]lu[dot]se)   

https://www.stemcellcenter.lu.se/core-facilities/lund-stem-cell-center-bioinformatics-facility/charges - 2025-03-14

AimThe purpose of this workshop is to introduce the fundamentals of R programming and Rstudio. By the end of the workshop participants should be able to load data, navigate it, perform simple operations and write small functions.Topics includeFlow controlFunctionsReading and writing tablesStandardising dataBasic plottingPrinciples of clustering data and resampling methods for statistical testingTh

https://www.stemcellcenter.lu.se/r-programming-foundations-i - 2025-03-14

AimThe field of bioinformatics is rooted in UNIX/Linux. The aim of this workshop is to demonstrate basic UNIX commands, and how to use LUNARC to store data and run jobs (such as sequence alignment) using the queuing system.Topics includeNavigating folders and listing filesMaking and deleting foldersCopying/Moving dataFinding filesSearching for expressions in files from the command line, and joinin

https://www.stemcellcenter.lu.se/basic-unixlinux-and-compute-cluster-usage - 2025-03-14

The course aims to provide a broad understanding of different aspects of flow cytometry, including experimental design, sample material handling, analysis of flow cytometry data, as well as file and image handling prior to research publication. The course provides practical knowledge of advanced flow cytometry that can be directly transferred to research questions. Learning Outcomes On completion

https://www.stemcellcenter.lu.se/education/research-school-stem-cell-biology/program-overview/courses-and-workshops/flow-cytometry-continuation-course - 2025-03-14

For bookings and consultations, contact the facility manager: shamit [dot] soneji [at] med [dot] lu [dot] se (Shamit[dot]Soneji[at]med[dot]lu[dot]se)      

https://www.stemcellcenter.lu.se/core-facilities/lund-stem-cell-center-bioinformatics-facility/booking - 2025-03-14

Böiers Group Our ResearchAcute leukemia is one of the most common cancers in children where cancer of the lymphoid lineage (acute lymphoblastic leukemia (ALL)) dominates. The ALL seen in children differs from the disease in adults with higher incidence, better prognosis but also different mutational spectrum. These facts suggest differences in the underlying biology and initiation of the disease b

https://www.stemcellcenter.lu.se/research-groups/boiers - 2025-03-14

Welcome to the joint Lund Stem Cell Center and MultiPark Electrophysiology Core Facility! The joint Electrophysiology Core Facility, supported by Lund Stem Cell Center and MultiPark, provides Lund University researchers with access to advanced electrophysiology techniques and expert guidance for investigating electrically active cells and tissues, helping to bring their projects to the forefront o

https://www.stemcellcenter.lu.se/core-facilities-0/electrophysiology-core-facility - 2025-03-14

Aim and format The main objective of this workshop is to provide you with strategies to build and maintain good working relationships with your coworkers. During the workshop, we will discuss professional standards, professional vs. personal relationships and boundaries, and introduce the core principles of effective working relationships: effective communication; assessing understanding; aligning

https://www.stemcellcenter.lu.se/research-school/program-overview/workshops-courses/working-relationships - 2025-03-14

Electrophysiology Core Facility The B10 set-up consists of a HEKA EPC10 double-patch clamp amplifier, an Olympus BX51WI microscope with multi-channel fluorescence capability and differential interference contrast for live imaging and optical manipulation of cells (e.g. optogenetics and calcium imaging), and a Hamamatsu C11440-10C camera. This set-up is also equipped with a Multielectrode Array (ME

https://www.stemcellcenter.lu.se/core-facilities-0/electrophysiology-core-facility/b10-platform - 2025-03-14

Aim and format The main objective of this mini-workshop is to help you make your meetings with your supervisor as constructive as possible. We will briefly introduce the importance of clear and structured communication, go through different techniques for running effective meetings, and also allow time for discussion. Target audience: PhD students, postdocs, Master students Date and time: TBD 2021

https://www.stemcellcenter.lu.se/research-school/program-overview/workshops-courses/meeting-techniques - 2025-03-14

ServicesAssisted data acquisition – providing experimental design, data collection and analysisFull service – scientific contribution to the project including planning/design of the study, illustration and description of the data, methods, results and interpretation of the results (to be discussed with the management)Consulting and trainingAccess to the equipment for independent useDevelopment of

https://www.stemcellcenter.lu.se/core-facilities-0/electrophysiology-core-facility/services-and-charges - 2025-03-14

UniStem "The long and fascinating journey of stem cell research" is an event for the dissemination and outreach of stem cell science dedicated to high school students. Program 08.45 - 09.15 | Registrering 09.15 - 09.30 | Opening och UniStem filmvisning Opening och UniStem filmvisning - Dr. Göran Karlsson Stamcellscentrum hälsar välkommen - Professor Zaal Kokaia 09.30 - 10.20 | Föreläsning: Stamcel

https://www.stemcellcenter.lu.se/research-school/program-overview/public-engagement/unistem2020 - 2025-03-14

For bookings and consultations, please contact the facility via email: electrophysiology [at] med [dot] lu [dot] se (electrophysiology[at]med[dot]lu[dot]se) Each project needs to be discussed with the facility personnel in order to identify type of work and assistance needed and make a cost estimation and potential booking. We encourage you to contact us well in advance and arrange a consultation

https://www.stemcellcenter.lu.se/core-facilities-0/electrophysiology-core-facility/booking - 2025-03-14

Each year, Lund Stem Cell Center presents its prestigious 'Article of the Year Award' to acknowledge and celebrate the novel discoveries made by its members. Since 2017, Principal Investigators from across the Center have been invited every year to nominate publications written by researchers within their group. Following an external evaluation process the results are announced at the annual retre

https://www.stemcellcenter.lu.se/events/article-year-award - 2025-03-14

SCC Annual Retreat 2024 Hotel Skånsen, Båstad, Sweden Lund Stem Cell Center Annual Retreat 2024Lund Stem Cell Center's Annual Retreat in 2024 will take place Monday, September 30, 2024 - Tuesday, October 01, 2024 at Hotel Skansen in Båstad, Sweden. Participation is open to members of the Lund Stem Cell Center only. Registration is now closed. Questions? Please contact the Retreat Coordinator: Clai

https://www.stemcellcenter.lu.se/news/events/lund-stem-cell-centers-annual-retreat - 2025-03-14